miRBase entry: cfa-mir-8839

Stem-loop cfa-mir-8839


Accession
MI0027925
Description
Canis lupus familiaris cfa-mir-8839 precursor miRNA


Sequence

37 reads, 3.0 reads per million, 12 experiments
ugaguaacaugcccggaggcacagagcuagUAAUUGGCAGAGCCAGGAUUCAAGCccagcgaggcugcuccagaacccgggcucuugccagcuccgcaggcugucuccuaggaguuguucgaggg
((((((((...((.((((((((.(((((.......(((((((((.((.(((..(..((((...))))..)..))).)).))))).))))))))).).....)))))))..)).))))))))....

Structure
----        aug  -c       ----- a     agUAAUU    -     A  A   AA Cc    g 
    ugaguaac   cc  ggaggca     c gagcu       GGCA GAGCC GG UUC  G  cagc  
    ||||||||   ||  |||||||     | |||||       |||| ||||| || |||  |  |||| a
    gcuuguug   gg  ccucugu     g cucga       ccgu cucgg cc aag  c  gucg  
ggga        --a  au       cggac c     -------    u     g  c   ac uc    g 


Annotation confidence Not enough data
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Genome context
15: 1375114-1375238 [+]

Database links

Mature cfa-miR-8839-5p

Accession MIMAT0034332
Description Canis lupus familiaris cfa-miR-8839-5p mature miRNA
Sequence 31 - UAAUUGGCAGAGCCAGGAUUCAAGC - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545