Stem-loop cfa-mir-8838

Accession

MI0027924

Description

Canis lupus familiaris cfa-mir-8838 precursor miRNA

Sequence

5 reads, 4.0 reads per million, 3 experiments

aagaaaagaccauucuuugguuucagggcagaugugggauagacauacaaguuugcugagcauucaagcucaUAAAUUUUCUCUAGGACAAUCUgccucugaacuuaauuuugaauaauaaggacuugg
.......(((((.....)))))(((((((((((.((...((((.....(((((((.(((((......))))))))))))..))))...))))))))).))))...........................

Structure

-----aagaaaagaccauucuuugguu    -       g  gga    cauac       c     au 
                           ucag ggcagau ug   uaga     aaguuug ugagc  u
                           |||| ||||||| ||   ||||     ||||||| |||||   
                           aguc ccgUCUA AC   AUCU     UUUAAAU acucg  c
gguucaggaauaauaaguuuuaauuca    u       -  AGG    ---CU       -     aa 

Annotation confidence Not enough data

Genome context

15: 27601413-27601541 [+]

Mature cfa-miR-8838-3p

• Accession: MIMAT0034331
• Description: Canis lupus familiaris cfa-miR-8838-3p mature miRNA
• Sequence: 73 - UAAAUUUUCUCUAGGACAAUCU - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545