Stem-loop cfa-mir-8834a-1

Accession

MI0027920

Description

Canis lupus familiaris cfa-mir-8834a-1 precursor miRNA

Sequence

324 reads, 3.0 reads per million, 51 experiments

aggagcuacagcccuaguggcggggccagCUCUGGAAACCUGGAUUCagcucuggcaggaacuccggagcucuccgucugccgggccuggaggcuccggggcggggccgcugaucuGCUCAGCUGGGGCAGGAGCGUCCUC
(((((((...(((((((((((((((((.((((((((..(((....((((.(((((((((.....((((....))))))))))))).))))))).))))))))..))))......)))))..))))))))...))).)))).

Structure

-    -   aca        --     ------    -a        AA   GGAU    c         aacuc    g 
 agga gcu   gcccuagu  ggcgg      ggcc  gCUCUGGA  CCU    UCag ucuggcagg     cgga c
 |||| |||   ||||||||  |||||      ||||  ||||||||  |||    |||| |||||||||     ||||  
 UCCU CGA   CGGGGUCG  UCGuc      ccgg  cggggccu  gga    gguc gggccgucu     gccu u
C    G   GGA        AC     uagucg    gg        -c   ----    c         -----    c 

Annotation confidence Low

Genome context

12: 41483687-41483827 [+]

Mature cfa-miR-8834a-5p

• Accession: MIMAT0051975
• Description: Canis lupus familiaris cfa-miR-8834a-5p mature miRNA
• Sequence: 30 - CUCUGGAAACCUGGAUUC - 47
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8834a-3p

• Accession: MIMAT0034327
• Description: Canis lupus familiaris cfa-miR-8834a-3p mature miRNA
• Sequence: 117 - GCUCAGCUGGGGCAGGAGCGUCCUC - 141
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545