Stem-loop cfa-mir-8830-3

Accession

MI0027917

Description

Canis lupus familiaris cfa-mir-8830-3 precursor miRNA

Sequence

60 reads, 11.0 reads per million, 5 experiments

ggaccggcuucccucauggccgaggcaggacccgcuucccUCGUCGCUGAGGCAGGACCGACUUCccucaugaccgaggcagacccggcuucccucaugaccgaggcagacccggcuucccucauggccgaggcagacccggcuu
((.((((.((.((((..((((((((..(((.(((..((((((((((.(((((.(((.(((.((..((((......)))).))...)))))).)))))))).)))))..))..))).)))))))..))))))))..)).)))))).

Structure

-  a    c  -c    au    --    ca   c   cu  --     -   C     C   A   --A  UC    au 
 gg ccgg uu  ccuc  ggcc  gagg  gga ccg  uc  ccUCG UCG UGAGG AGG CCG   CU  ccuc  g
 || |||| ||  ||||  ||||  ||||  ||| |||  ||  ||||| ||| ||||| ||| |||   ||  ||||   
 uc ggcc ag  ggag  ccgg  cucc  cuu ggc  ag  ggagc agu acucc uuc ggc   ga  ggag  a
u  -    c  ac    --    ua    --   c   cc  ac     c   -     c   -   cca  -c    cc 

Annotation confidence Not enough data

Genome context

11: 14725621-14725765 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-8830-3

Mature cfa-miR-8830-5p

• Accession: MIMAT0034323
• Description: Canis lupus familiaris cfa-miR-8830-5p mature miRNA
• Sequence: 41 - UCGUCGCUGAGGCAGGACCGACUUC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545