Stem-loop cfa-mir-8828

Accession

MI0027911

Description

Canis familiaris cfa-mir-8828 precursor miRNA

Sequence

cagaaagcauuccuguccuuggccgugccgccgugcagccucagggcuggagucuggagacccgagcugccaucugaccuGGCGACUGGCUCCGUAGGCCCUCAGuucccuccccugccacaggcacccagguuguacaggagga
.........(((((((((((((..(((((...(.((((....((((((((.((((((((.((..((.(((((.......))))).))))))))..)))).).)))..))))...)))))...))))))))))..).)))))))..

Structure

cagaaagca       - --     cc     gcc u    ccuc    --   - a    --    a  cg  c     uc 
         uuccugu c  cuugg  gugcc   g gcag    aggg  cug g gucu  ggag cc  ag ugcca  u
         ||||||| |  |||||  |||||   | ||||    ||||  ||| | ||||  |||| ||  || |||||  g
         gaggaca g  ggacc  cacgg   c cguc    uccc  GAC C CGGA  CCUC GG  UC GCGGu  a
-------ag       u uu     --     aca -    -ccc    uu   U C    UG    -  --  A     cc 

Annotation confidence Not enough data

Genome context

chr10: 27182717-27182861 [-]

Mature cfa-miR-8828

• Accession: MIMAT0034320
• Description: Canis familiaris cfa-miR-8828 mature miRNA
• Sequence: 81 - GGCGACUGGCUCCGUAGGCCCUCAG - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545