Stem-loop cfa-mir-8818

Accession

MI0027899

Description

Canis lupus familiaris cfa-mir-8818 precursor miRNA

Sequence

262 reads, 12.0 reads per million, 14 experiments

acagcaaacgggcucagagcugagggugcgugccuuuccCUGGGAGACCUUCCUGUCCuuagaggaaagcgggaaucccacaggggugugggugcuggaguccccCACCUGGGAGCCUGUGCGGA
...((..((((((((..((.((.(((.((((((((.((((((((.((..((((((((((...)))...))))))))))).))))))...))))))....)).))))).))..))))))))))...

Structure

aca  aa        ag  c  a   u  ----      --u      -  A  CC       ---   u 
   gc  acgggcuc  ag ug ggg gc    gugccu   uccCUG GG GA  UUCCUGU   CCu  
   ||  ||||||||  || || ||| ||    ||||||   |||||| || ||  |||||||   ||| a
   CG  UGUCCGAG  UC AC ccc ug    cguggg   ggggac cc cu  aagggcg   gga  
AGG  --        GG  C  -   c  aggu      ugu      a  -  --       aaa   g 

Annotation confidence High

Genome context

28: 41844281-41844405 [+]

Mature cfa-miR-8818-5p

• Accession: MIMAT0051971
• Description: Canis lupus familiaris cfa-miR-8818-5p mature miRNA
• Sequence: 40 - CUGGGAGACCUUCCUGUCC - 58
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8818-3p

• Accession: MIMAT0034308
• Description: Canis lupus familiaris cfa-miR-8818-3p mature miRNA
• Sequence: 106 - CACCUGGGAGCCUGUGCGGA - 125
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545