Stem-loop cfa-mir-8808

Accession

MI0027888

Description

Canis lupus familiaris cfa-mir-8808 precursor miRNA

Sequence

4 reads, 1.0 reads per million, 3 experiments

ccuggggaacgccggccucacccgcUGGGAAGAACAGAGCCGCGACgugggcgcugcgguggccucugucccccugaguccguucaagcgcuggcacacucgguggu
.(((((....((((((((.((..(((.((..(.((((((((((..(((((...))))))))).)))))).)..)).)))..))...)).))))))...)))))....

Structure

---c     gaac      -  --c  cc   G  AA A      -    GA     g 
    cuggg    gccggc cu   ac  gcU GG  G ACAGAG CCGC  Cgugg  
    |||||    |||||| ||   ||  ||| ||  | |||||| ||||  ||||| c
    ggcuc    cggucg ga   ug  uga uc  c ugucuc ggug  gcguc  
uggu     -aca      c  acu  cc   g  cc c      c    --     g 

Annotation confidence Not enough data

Genome context

23: 49820125-49820231 [+]

Mature cfa-miR-8808-5p

• Accession: MIMAT0034298
• Description: Canis lupus familiaris cfa-miR-8808-5p mature miRNA
• Sequence: 26 - UGGGAAGAACAGAGCCGCGAC - 46
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545