Stem-loop cfa-mir-8805

Accession

MI0027885

Description

Canis lupus familiaris cfa-mir-8805 precursor miRNA

Sequence

4 reads, 5.0 reads per million, 3 experiments

uccaguggggaggcccuggucagggagggggcggccagggggcugacacgccccucgucuuccucaugggcggacaguccUGAGGAAUGUCGUGUCCAGCUCCUUagggacccacggggcugaccagggcccacccugcccgcuc
....((((((.((((((((((((...((((....((((((((((((((((.....(((..((((((.((((.....))))))))))))).))))).))))))))).))..))).)....))))))))))))..))))))......

Structure

--ucca      -a            -gga -   gcgg  -         -     ccccu   cu      u    g 
      gugggg  ggcccuggucag    g ggg    cc agggggcug acacg     cgu  uccuca gggc g
      ||||||  ||||||||||||    | |||    || ||||||||| |||||     |||  |||||| |||| a
      cguccc  ccgggaccaguc    c ccc    gg UUCCUCGAC UGUGC     GUA  AGGAGU ccug c
cucgcc      ac            gggg a   --ag  a         C     ----U   --      -    a 

Annotation confidence Not enough data

Genome context

20: 58078352-58078496 [-]

Mature cfa-miR-8805-3p

• Accession: MIMAT0034295
• Description: Canis lupus familiaris cfa-miR-8805-3p mature miRNA
• Sequence: 81 - UGAGGAAUGUCGUGUCCAGCUCCUU - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545