Stem-loop cfa-mir-8794-1

Accession

MI0027874

Description

Canis familiaris cfa-mir-8794-1 precursor miRNA

Sequence

ccucuuaucccaguggagcugauguccugagcuggaaucggcaaguggccuggggacaaaauggUGCCCCAUCAUCAGCCUCCCCAGUgaagggcucucuguccucugcacgg
..........(((.(((...((.(((((..(((((....(((..((((..(((((((......)).)))))))))..)))...)))))..)))))))....))).))).....

Structure

ccucuuaucc   u   -gcu  u     ga     aauc   aa    cc     -  aa 
          cag gga    ga guccu  gcugg    ggc  gugg  ugggg ac  a
          ||| |||    || |||||  |||||    |||  ||||  ||||| ||   
          guc ccu    cu cggga  UGACC    CCG  UACU  ACCCC Ug  a
-----ggcac   u   gucu  -     ag     -CCU   AC    --     G  gu 

Annotation confidence Low

Genome context

chr16: 10434119-10434231 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-8794-1

Mature cfa-miR-8794

• Accession: MIMAT0034284
• Description: Canis familiaris cfa-miR-8794 mature miRNA
• Sequence: 65 - UGCCCCAUCAUCAGCCUCCCCAGU - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545