Stem-loop gra-MIR8638

Accession

MI0027861

Description

Gossypium raimondii gra-MIR8638 precursor miRNA

Sequence

410 reads, 71.0 reads per million, 13 experiments

gugagaauggUGAAUACAGGAAUGGCUCUCUgugccaaucucguuaaagugagggcucuacccuaccucuauuuacgacuacacguuggcccguucagauuuagguguucaguggaaagauaaccuaucaccuaaaguuuucaugaccacuuagauuaggguagagcccucucuuuacgagguuggcgcagauagccAUUCUUGUAUUCACCAUUCUCUACu
(((((((((((((((((((((((((((.((((((((((((((((.((((.((((((((((((((...........((((.....)))).........((((((((((.(((.((((((...................))))))))).)))))))))))))))))))))))).)))))))))))))))))))).))))))))))))))))))))))))).)).

Structure

-  -                         C                u    u              accucuauuuacgacuacacguuggcccguuca          u   g      gauaaccu 
 gu gagaauggUGAAUACAGGAAUGGCU UCUgugccaaucucgu aaag gagggcucuacccu                                 gauuuaggug uca uggaaa        a
 || ||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||                                 |||||||||| ||| ||||||        u
 CA CUCUUACCACUUAUGUUCUUAccga agacgcgguuggagca uuuc cucccgagauggga                                 uuagauucac agu acuuuu        c
u  U                         u                -    u              ---------------------------------          c   -      gaaaucca 

Annotation confidence Low

Genome context

chr13: 56581801-56582022 [-]

Mature gra-miR8638-5p

• Accession: MIMAT0034266
• Description: Gossypium raimondii gra-miR8638-5p mature miRNA
• Sequence: 11 - UGAAUACAGGAAUGGCUCUCU - 31
• Evidence: experimental ; Illumina [1]

Mature gra-miR8638-3p

• Accession: MIMAT0055557
• Description: Gossypium raimondii gra-miR8638-3p mature miRNA
• Sequence: 198 - AUUCUUGUAUUCACCAUUCUCUAC - 221
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629