miRBase entry: gra-MIR7484n

Stem-loop gra-MIR7484n


Accession
MI0027853
Description
Gossypium raimondii gra-MIR7484n precursor miRNA


Sequence

10866 reads, 1992.0 reads per million, 13 experiments
uaguccucuacauuagaucaaagacuaaauuggucauaucuguaaaaaauuucauccaauuguacuguuaAAAACUUGUGUGGCUAACAGAAauaaccaauuagugacauauggcuugccacauguaccuuaaaaauaaaugaaauuuuaagcaaaaggaccacuggaCUAGUUUGCUCUUUGAUCUAAUGUacaaggauca
..(((((.((((((((((((((((.((((((((((.....(((..((((((((((......(((((((..((..(.(((((.(((((..(.......)..))))).))))).)..))...))).))))...........))))))))))..)))..((.....)).)))))))))).))))))))))))))))..)))))..

Structure
ua     -c                c          -------auauc   aa          -----ccaauu    -   -ua  AA U     G     CA AA 
  guccu  uacauuagaucaaaga uaaauugguc            ugu  aaaauuucau           guac ugu   AA  C UGUGU GCUAA  G  a
  |||||  |||||||||||||||| ||||||||||            |||  ||||||||||           |||| |||   ||  | ||||| |||||  |  u
  uagga  aUGUAAUCUAGUUUCU GUUUGAUCag            acg  uuuuaaagua           caug aca   uu  g auaca ugauu  c  a
ac     ac                C          gucaccaggaaa   aa          aauaaaaauuc    u   ccg  cg u     g     aa ca 


Annotation confidence Low
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Genome context
chr6: 49675651-49675852 [+]

Database links

Mature gra-miR7484n-5p

Accession MIMAT0055552
Description Gossypium raimondii gra-miR7484n-5p mature miRNA
Sequence 71 - AAAACUUGUGUGGCUAACAGAA - 92
Evidence experimental
unknown

Mature gra-miR7484n-3p

Accession MIMAT0034258
Description Gossypium raimondii gra-miR7484n-3p mature miRNA
Sequence 169 - CUAGUUUGCUCUUUGAUCUAAUGU - 192
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629