Stem-loop gra-MIR7492f

Accession

MI0027844

Description

Gossypium raimondii gra-MIR7492f precursor miRNA

Sequence

1643 reads, 358.0 reads per million, 13 experiments

uuugugauagaagcgcugcuaaaggucAUGAUCUUUAGCGGCGUUUgugauagaagcgcugcuaaaggucauuaucuuuagcggcguuugugauaaaagcaccgcuaaaggCCAUGAUCUUUAGCGGCGUUUuuuucacaua
..(((((.((((((((((((((((((((((.((((((((((.((((....((.((((((((((((((((....)))))))))))))))).))....)))).)))))))))).)))))))))))))))))))))).)))))..

Structure

uu     u                      A          C    guga  g                c 
  uguga agaagcgcugcuaaaggucAUG UCUUUAGCGG GUUU    ua aagcgcugcuaaaggu a
  ||||| |||||||||||||||||||||| |||||||||| ||||    || ||||||||||||||||  
  acacu uuUUUGCGGCGAUUUCUAGUAC ggaaaucgcc cgaa    gu uuugcggcgauuucua u
au     u                      C          a    aaua  g                u 

Annotation confidence Low

Genome context

chr5: 27401230-27401371 [-]

Mature gra-miR7492f-5p

• Accession: MIMAT0055543
• Description: Gossypium raimondii gra-miR7492f-5p mature miRNA
• Sequence: 28 - AUGAUCUUUAGCGGCGUUU - 46
• Evidence: experimental ; unknown

Mature gra-miR7492f-3p

• Accession: MIMAT0034249
• Description: Gossypium raimondii gra-miR7492f-3p mature miRNA
• Sequence: 112 - CCAUGAUCUUUAGCGGCGUUU - 132
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629