miRBase entry: gra-MIR8787

Stem-loop gra-MIR8787


Accession
MI0027836
Description
Gossypium raimondii gra-MIR8787 precursor miRNA


Sequence

777 reads, 168.0 reads per million, 12 experiments
acaucauccaugaucccgccuaauugaaagaagacacaucaucuuugguuugaaaguUUAGUCCGAAUAUACAUAUGAUAugaaaaaaaaaagaugauguguUUUUCUUUUAAUUGGACGAGAUAaugaaugaug
.((((((.(((.(((.((.(((((((((((((((((((((((((((..(((...(..(((...............)))..)...)))..)))))))))))).))))))))))))))).)).))).))).))))))

Structure
a      c   g   c  c               -            gg   gaa gu   GUCCGA 
 caucau cau auc cg cuaauugaaagaaga cacaucaucuuu  uuu   a  UUA      A
 |||||| ||| ||| || ||||||||||||||| ||||||||||||  |||   |  |||      U
 guagua gua UAG GC GGUUAAUUUUCUUUU guguaguagaaa  aaa   u  AGU      A
-      a   A   A  A               u            aa   aag AU   AUACAU 


Annotation confidence Low
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Genome context
chr12: 5020967-5021101 [+]

Database links

Mature gra-miR8787-5p

Accession MIMAT0055538
Description Gossypium raimondii gra-miR8787-5p mature miRNA
Sequence 58 - UUAGUCCGAAUAUACAUAUGAUA - 80
Evidence experimental
unknown

Mature gra-miR8787-3p

Accession MIMAT0034241
Description Gossypium raimondii gra-miR8787-3p mature miRNA
Sequence 103 - UUUUCUUUUAAUUGGACGAGAUA - 125
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629