miRBase entry: gra-MIR7504k

Stem-loop gra-MIR7504k


Accession
MI0027820
Description
Gossypium raimondii gra-MIR7504k precursor miRNA


Sequence

263 reads, 59.0 reads per million, 11 experiments
aucagauuuuUUUCUCCUGAUUUUUAGCAUUUUUaguugaauuugaauuuuuuuauaggaaauugcugaaaaUCAGGAGGAAAAAUCUuau
...(((((((((.((((((((((((((((.((((...((((..........))))...)))).)))))))))))))))))))))))))...

Structure
auc         U                U    agu    uuug 
   agauuuuUU CUCCUGAUUUUUAGCA UUUU   ugaa    a
   ||||||||| |||||||||||||||| ||||   ||||     
   UCUAAAAAG GAGGACUaaaagucgu aaag   auuu    a
uau         -                u    gau    uuuu 


Annotation confidence Low
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Genome context
chr13: 5200008-5200098 [-]

Database links

Mature gra-miR7504k-5p

Accession MIMAT0034225
Description Gossypium raimondii gra-miR7504k-5p mature miRNA
Sequence 11 - UUUCUCCUGAUUUUUAGCAUUUUU - 34
Evidence experimental
Illumina [1]

Mature gra-miR7504k-3p

Accession MIMAT0055528
Description Gossypium raimondii gra-miR7504k-3p mature miRNA
Sequence 73 - UCAGGAGGAAAAAUCU - 88
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629