Stem-loop gra-MIR482d

Accession

MI0027819

Description

Gossypium raimondii gra-MIR482d precursor miRNA

Literature search

1 open access papers mention gra-MIR482d
(25 sentences)

Sequence

28712 reads, 4290.0 reads per million, 13 experiments

acuggaaauuuuuGGAAGUGGGGUGCGAGGAAAGAUCAuuucucuucucucuuauauauauacacacacacacacacacacacauacaaagagaucaaaccagaucUUUCCUAUGCCCCCCAUUCCACugauuucuag
.(((((((((..(((((.(((((.(((((((((((((........(((((.......................................)))))........)))))))))).))).))))))))))..)))))))))

Structure

a         uu     G     U   -          Auuucucu     cuuauauauauacacaca 
 cuggaaauu  uGGAA UGGGG GCG AGGAAAGAUC        ucucu                  c
 |||||||||  ||||| ||||| ||| ||||||||||        |||||                  a
 gaucuuuag  ACCUU ACCCC CGU UCCUUUcuag        agaga                  c
-         uC     -     C   A          accaaacu     aacauacacacacacaca 

Annotation confidence High

Genome context

chr5: 56339343-56339480 [+]

Mature gra-miR482d-5p

• Accession: MIMAT0055527
• Description: Gossypium raimondii gra-miR482d-5p mature miRNA
• Sequence: 14 - GGAAGUGGGGUGCGAGGAAAGAUCA - 38
• Evidence: experimental ; unknown

Mature gra-miR482d-3p

• Accession: MIMAT0034224
• Description: Gossypium raimondii gra-miR482d-3p mature miRNA
• Sequence: 107 - UUUCCUAUGCCCCCCAUUCCAC - 128
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629