miRBase entry: gra-MIR7484j

Stem-loop gra-MIR7484j


Accession
MI0027812
Description
Gossypium raimondii gra-MIR7484j precursor miRNA


Sequence

12933 reads, 1717.0 reads per million, 13 experiments
gaauuauucuuuauauguuagauuaaaaaguaaauuaguucuucuguuaaaaguuuuaucuauuuuuacuacuaaaaacuaauccacguaugucagAAUGAGGUAAAUGUGGCAugucauguguaacuauuugguuguucuauuguccugccaauuuuaacaguaaaaauggaugaaauuuuuaacaaaaaggacuggUUUACUCUUUGAUCUAACGUACAaauacuaauu
.(((((...(((.((((((((((((((.(((((((((((((((.((((((((((((((((((((((((((..(((((.......(((((((((((.(.(......).).))))))...))))).......(((((.(..(....)..).))))))))))..))))))))))))))))))))))))))..))))))))))))))).)))))))))))))).)))...)))))

Structure
g     uuc   a              a               -c                          ac     ------------------------acuaauc     ---      g A GA 
 aauua   uuu uauguuagauuaaa aguaaauuaguucuu  uguuaaaaguuuuaucuauuuuuacu  uaaaa                               cacgu   auguca A U  G
 |||||   ||| |||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||  |||||                               |||||   |||||| | |   
 uuaau   aaA AUGCAAUCUAGUUU UCAUUUggucaggaa  acaauuuuuaaaguagguaaaaauga  auuuu                               gugua   uACGGU U A  G
-     cau   C              C               aa                          ca     aaccguccuguuaucuuguugguuuaucaau     cug      G A AU 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
chr1: 9278760-9278990 [+]

Database links

Mature gra-miR7484j-5p

Accession MIMAT0055524
Description Gossypium raimondii gra-miR7484j-5p mature miRNA
Sequence 97 - AAUGAGGUAAAUGUGGCA - 114
Evidence experimental
unknown

Mature gra-miR7484j-3p

Accession MIMAT0034217
Description Gossypium raimondii gra-miR7484j-3p mature miRNA
Sequence 199 - UUUACUCUUUGAUCUAACGUACA - 221
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629