Stem-loop gra-MIR7484h

Accession

MI0027810

Description

Gossypium raimondii gra-MIR7484h precursor miRNA

Sequence

7000 reads, 1040.0 reads per million, 13 experiments

uauuaaaaauuucAUCCAUUUGUAUUGUUAAAAACUGgucuggcugacagaauaaccaaauagagacauguaaugugcuauguauaccucacacugacguacauggaucaauuUUUAACCGUAGAAAUGGAUGAaauuuuuaau
.((((((((((((((((((((.(((.((((((((.(((((((.....))))....)))....((..((((((.(((.(..(((.......)))..))))))))))..))..)))))))).))).))))))))))))))))))))

Structure

u                    G   U        ----------------------------------------------------C   ----    g 
 auuaaaaauuucAUCCAUUU UAU GUUAAAAA                                                     UGg    ucug c
 |||||||||||||||||||| ||| ||||||||                                                     |||    |||| u
 uaauuuuuaaAGUAGGUAAA AUG CAAUUUuu                                                     acc    agac g
-                    G   C        aacuagguacaugcagucacacuccauauguaucguguaauguacagagauaa   aaua    a 

Annotation confidence High

Genome context

chr2: 61887427-61887570 [+]

Mature gra-miR7484h-5p

• Accession: MIMAT0055522
• Description: Gossypium raimondii gra-miR7484h-5p mature miRNA
• Sequence: 14 - AUCCAUUUGUAUUGUUAAAAACUG - 37
• Evidence: experimental ; unknown

Mature gra-miR7484h-3p

• Accession: MIMAT0034215
• Description: Gossypium raimondii gra-miR7484h-3p mature miRNA
• Sequence: 114 - UUUAACCGUAGAAAUGGAUGA - 134
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629