miRBase entry: gra-MIR8773

Stem-loop gra-MIR8773


Accession
MI0027806
Description
Gossypium raimondii gra-MIR8773 precursor miRNA


Sequence

3849 reads, 687.0 reads per million, 13 experiments
auuaaggggcUUGGAUGAACGGUGCGUUUACUUgugguuagcguaaaaacagcggugauggugggauuaaauauuguagcgacacuguagggugagauaaAAAAAUAAGCUAAACGCACCGCccgcccaaacccacccua
......(((.((((.((..((((((((((((((((..............(.((((((.((.((.(((.....))).)).)).)))))).)..............))))).)))))))))))..)).)))).)))......

Structure
auuaag   c    A  AA           -     gguuagcguaaaaa a      a  g  g   u 
      ggg UUGG UG  CGGUGCGUUUA CUUgu              c gcggug ug ug gau a
      ||| |||| ||  ||||||||||| |||||              | |||||| || || ||| a
      ccc aacc gc  GCCACGCAAAU GAAUA              g ugucac gc au uua a
auccca   a    c  cC           C     AAAAaauagagugg a      a  g  g   u 


Annotation confidence Low
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Genome context
chr12: 34048888-34049027 [-]

Database links

Mature gra-miR8773-5p

Accession MIMAT0034211
Description Gossypium raimondii gra-miR8773-5p mature miRNA
Sequence 11 - UUGGAUGAACGGUGCGUUUACUU - 33
Evidence experimental
Illumina [1]

Mature gra-miR8773-3p

Accession MIMAT0055519
Description Gossypium raimondii gra-miR8773-3p mature miRNA
Sequence 101 - AAAAAUAAGCUAAACGCACCGC - 122
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629