Stem-loop gra-MIR8770

Accession

MI0027803

Description

Gossypium raimondii gra-MIR8770 precursor miRNA

Sequence

agauauacagUUGAUGGUGGUAAGAAAUGUGCAUaauaaaauuaaaauguauaauuaaauuaaaacaaaauuuuaguugagugauaaauuuaaaggauuuuuaaugcaauugacauguguucaaaucucacuauagucauuuuauaauuucucuaaucgaauuguugucugauuaacuuaaucagagauuuuauuaguaguauaaaaaacaauaaagagauuugaaccuacacccaucacauugcuaaaaacauuauauuuaccacuuaaccaaacauuuauuuugauuuuuuauacauuuuuauuuuauuaugaauauuuuauuaucuccaucaauuauauuua
(((((((..((((((((.((((((((((((.(((((((((((.(((((((((((..(((((((((.(((..(((.((((((((.(((((.(((..(.((((((..((((((((..((((((((((((((..(((.((..(((((((....(((((((.(((((....((((((((...))))))))))))).))))).))))))))).)).)))..)))))))))))..)))....))).)))))))))))).))).))))).)))))))).)))..))).))))))))).))))))))))).))))))))))).))))))).))))).))))))))))))))).

Structure

-       ca        U     -       G           u           uu         c   au   a        a     u   ag a      au     -   --ca   --           ac   a  ca       auuu  -     c     guug        a 
 agauaua  gUUGAUGG GGUAA GAAAUGU CAUaauaaaau aaaauguauaa  aaauuaaaa aaa  uuu guugagug uaaau uaa  g uuuuua  gcaau uga    ugu  guucaaaucuc  uau gu  uuuuaua    cu cuaau gaauu    ucugauua  
 |||||||  |||||||| ||||| ||||||| ||||||||||| |||||||||||  ||||||||| |||  ||| |||||||| ||||| |||  | ||||||  ||||| |||    |||  |||||||||||  ||| ||  |||||||    || ||||| |||||    |||||||| c
 uuuauau  uaacuacc cuauu uuuuaua guauuauuuua uuuuacauauu  uuuaguuuu uuu  aaa caauucac auuua auu  c aaaaau  cguua acu    aca  caaguuuagag  aua ca  aaaauau    ga gauua uuuag    agacuaau  
a       --        u     a       a           u           -u         a   ac   c        c     u   -a -      --     c   accc   uc           aa   a  -a       ----  u     u     ----        u 

Annotation confidence Not enough data

Genome context

chr1: 3316103-3316447 [+]

Mature gra-miR8770

• Accession: MIMAT0034208
• Description: Gossypium raimondii gra-miR8770 mature miRNA
• Sequence: 11 - UUGAUGGUGGUAAGAAAUGUGCAU - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629