miRBase entry: gra-MIR8768

Stem-loop gra-MIR8768


Accession
MI0027799
Description
Gossypium raimondii gra-MIR8768 precursor miRNA


Sequence

2887 reads, 295.0 reads per million, 13 experiments
uccuuuucuuUUCCAUGUCACAGAGAUGUUGuguaggucauuucaaaucguuucucugcucagaaauuaauagucaggaagcaucaacaucuUUGUGAUAUGGAAAAGAAGGUGAaggag
((((((((((((((((((((((((((((((((((...((..........((((((......))))))..........)).))).)))))))))))))))))))))))))....)))))).

Structure
-      ----                         -   agg  auuucaaauc      cu 
 uccuuu    ucuuUUCCAUGUCACAGAGAUGUUG ugu   uc          guuucu  g
 ||||||    ||||||||||||||||||||||||| |||   ||          ||||||   
 aggaAG    AGAAAAGGUAUAGUGUUucuacaac acg   ag          uaaaga  c
g      UGGA                         u   --a  gacugauaau      cu 


Annotation confidence Low
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Genome context
chr7: 29414742-29414861 [+]

Database links

Mature gra-miR8768-5p

Accession MIMAT0034204
Description Gossypium raimondii gra-miR8768-5p mature miRNA
Sequence 11 - UUCCAUGUCACAGAGAUGUUG - 31
Evidence experimental
Illumina [1]

Mature gra-miR8768-3p

Accession MIMAT0055514
Description Gossypium raimondii gra-miR8768-3p mature miRNA
Sequence 93 - UUGUGAUAUGGAAAAGAAGGUGA - 115
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629