miRBase entry: gra-MIR8762b

Stem-loop gra-MIR8762b


Accession
MI0027789
Description
Gossypium raimondii gra-MIR8762b precursor miRNA


Sequence

1204 reads, 238.0 reads per million, 13 experiments
gauagaaaagUUAACGUUUGUUAACUUUGUUGAUguagaauauauguggauugucaaguaaucauuuaauuaauuuuuuaaaauuaaaaaauauuaaaauauuuuuuuauaauuucuauaauuauuuuuaauuuuuaaaaauauuauauauauuuuugauuuuuuuaaaaucuaaaaauuuaauuAAAUAUUGAUGUGUCAUCcacuuggcaauccauguguaugcaacaucaacaaaguuagaaaaauguuaacuuuuucauuca
((..(((((((((((((((.((((((((((((((((.(.((((((((((((((((((((....((((((((((.((((((.....(((((((((....))))))))).((((((.....))))))((((((...((((((((((.....)))))))))).....))))))..)))))).))))))))))...((((...)))).)))))))))))))))))))).).))))))))))))))))..)))))))))))))))...)).

Structure
-  -ua               -G                a a                    aaucauuuaauuaauuuuuuaaaauuaaaaaauauuaaaauauuuuuuuauaauuucuauaauuauuuuuaauuuuuaaaaauauuauauauauuuuugauuuuuuuaaaaucuaaaaauuuaauuAAAUAUU    U 
 ga   gaaaagUUAACGUUU  UUAACUUUGUUGAUgu g auauauguggauugucaagu                                                                                                                                     GAUG  
 ||   |||||||||||||||  |||||||||||||||| | ||||||||||||||||||||                                                                                                                                     |||| G
 cu   uuuuucaauuguaaa  gauugaaacaacuaca c uauguguaccuaacgguuca                                                                                                                                     CUAC  
a  uac               aa                a g                    ------------------------------------------------------------------------------------------------------------------------------------c    U 


Annotation confidence Low
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Genome context
chr7: 26992815-26993080 [+]

Database links

Mature gra-miR8762b-5p

Accession MIMAT0034194
Description Gossypium raimondii gra-miR8762b-5p mature miRNA
Sequence 11 - UUAACGUUUGUUAACUUUGUUGAU - 34
Evidence experimental
Illumina [1]

Mature gra-miR8762b-3p

Accession MIMAT0055505
Description Gossypium raimondii gra-miR8762b-3p mature miRNA
Sequence 186 - AAAUAUUGAUGUGUCAUC - 203
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629