miRBase entry: gra-MIR7502e

Stem-loop gra-MIR7502e


Accession
MI0027788
Description
Gossypium raimondii gra-MIR7502e precursor miRNA


Sequence

1139 reads, 224.0 reads per million, 13 experiments
aguuaaaauauuuaucuauuuuuacuguuAAAAAUUGGCGUAGCUGAcacauggcuuugucacauguaccucauggcaauguacaaagaccaguucUUAACGGUAGAAAUGGAUGAAuuuuuuaaca
.(((((((.((((((((((((((((((((((.((((((.((.....))......((((((.((((...((....))..)))))))))).)))))).)))))))))))))))))))))).))))))).

Structure
a       u                      A      ----------------------------------------C  A 
 guuaaaa auuuaucuauuuuuacuguuAA AAUUGG                                         GU G
 ||||||| |||||||||||||||||||||| ||||||                                         || C
 caauuuu uAAGUAGGUAAAGAUGGCAAUU uugacc                                         cA U
a       u                      c      agaaacauguaacgguacuccauguacacuguuucgguaca  G 


Annotation confidence Low
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Genome context
chr13: 57171412-57171538 [-]

Database links

Mature gra-miR7502e-5p

Accession MIMAT0055504
Description Gossypium raimondii gra-miR7502e-5p mature miRNA
Sequence 30 - AAAAAUUGGCGUAGCUGA - 47
Evidence experimental
unknown

Mature gra-miR7502e-3p

Accession MIMAT0034193
Description Gossypium raimondii gra-miR7502e-3p mature miRNA
Sequence 97 - UUAACGGUAGAAAUGGAUGAA - 117
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629