miRBase entry: gra-MIR8762a

Stem-loop gra-MIR8762a


Accession
MI0027787
Description
Gossypium raimondii gra-MIR8762a precursor miRNA


Sequence

3933 reads, 641.0 reads per million, 13 experiments
gauggauaagUUAACAUUUGUUAACUUUGCUGACguggcaucuacguggauugucuuguuaaugucacaucaacagauaauuaauuuuuuaaauuuuaaaaaaauucaaaaaauuuauuaaaauuauuuaaaaauuaaauaaaauguuuuuuaauauuuuuaauuuuuuuaaaauuaauuaauugcuuacauggcauACAUGUGGACUGCCACAUgaaugcuacaucaacaagguaacagauguuaauuuaucuauuu
(((((((((((((((((((((((.(((((.(((.(((((((.......((((((((.(((.(((...))).))))))))))).........(((((((((((((((.(((((...((((((((((((((((...))))))))......)))))))))))))))))))))))))))).......((((.....))))..(((((((....))))))).))))))).))).)))))))))))))))))))))))))))).

Structure
-                       A     C   C       cuacguggauugucuuguuaaugucacaucaacagauaauuaauuuuuuaaauuuuaaaaaaauucaaaaaauuuauuaaaauuauuuaaaaauuaaauaaaauguuuuuuaauauuuuuaauuuuuuuaaaauuaauuaauugcuuacauggcauA       A 
 gauggauaagUUAACAUUUGUUA CUUUG UGA guggcau                                                                                                                                                             CAUGUGG C
 ||||||||||||||||||||||| ||||| ||| |||||||                                                                                                                                                             |||||||  
 uuaucuauuuaauuguagacaau ggaac acu caucgua                                                                                                                                                             gUACACC U
u                       -     a   a       ------------------------------------------------------------------------------------------------------------------------------------------------------------a       G 


Annotation confidence Low
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Genome context
chr6: 47375019-47375276 [-]

Database links

Mature gra-miR8762a-5p

Accession MIMAT0034192
Description Gossypium raimondii gra-miR8762a-5p mature miRNA
Sequence 11 - UUAACAUUUGUUAACUUUGCUGAC - 34
Evidence experimental
Illumina [1]

Mature gra-miR8762a-3p

Accession MIMAT0055503
Description Gossypium raimondii gra-miR8762a-3p mature miRNA
Sequence 198 - ACAUGUGGACUGCCACAU - 215
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629