Stem-loop gra-MIR166d

Accession

MI0027775

Description

Gossypium raimondii gra-MIR166d precursor miRNA

Literature search

2 open access papers mention gra-MIR166d
(6 sentences)

Sequence

3227852 reads, 328531.0 reads per million, 13 experiments

gcgaaaggguugaugGGAAUGUUGUUUGGCUCGAGGUCauuuaggguucgucuaauaucuacaugugcauacauacauagcccuauaugaugUCGGACCAGGCUUCAUUCCCaucaaccaaacacu
.......((((((((((((((..((((((.((((.(((((.(((((((..............(((((......)))))))))))).))))).)))).))))))..)))))))))))))).......

Structure

gcgaaag              UU      C    G     u       cgucuaauaucuac     ca 
       gguugaugGGAAUG  GUUUGG UCGA GUCau uaggguu              augug  u
       ||||||||||||||  |||||| |||| ||||| |||||||              |||||   
       ccaacuaCCCUUAC  CGGACC GGCU uagua aucccga              uacau  a
ucacaaa              UU      A    g     u       --------------     ac 

Annotation confidence High

Genome context

chr2: 55818490-55818615 [+]

Mature gra-miR166d-5p

• Accession: MIMAT0034180
• Description: Gossypium raimondii gra-miR166d-5p mature miRNA
• Sequence: 16 - GGAAUGUUGUUUGGCUCGAGGUC - 38
• Evidence: experimental ; Illumina [1]

Mature gra-miR166d-3p

• Accession: MIMAT0055495
• Description: Gossypium raimondii gra-miR166d-3p mature miRNA
• Sequence: 93 - UCGGACCAGGCUUCAUUCCC - 112
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629