Stem-loop gra-MIR8750

Accession

MI0027771

Description

Gossypium raimondii gra-MIR8750 precursor miRNA

Sequence

1766 reads, 324.0 reads per million, 13 experiments

aaggccauggUCUUAGUUGGCAUAUACUCAAGGAgcacgcagaagggagacaagcaacccagagugaagcauguguccagcaugccugaaguccgcucagaaugucaguccuaagaaaaaugggucaagucaugaaaaguggucucccuucugcgagcucauugaguAUAUGCGAACUGAGACCGCGgucuuc
((((((.(((((((((((.((((((((((((.((((.((((((((((((((.....(((((((.(((.((((((.....))))))((((.......))))....))).))..........))))).....(((.....))))))))))))))))).)))).)))))))))))).))))))))))).)))))).

Structure

-      a           G            G    a              -----------aagca     ----------  g   ------------------a      g 
 aaggcc uggUCUUAGUU GCAUAUACUCAA GAgc cgcagaagggagac                accca          ga uga                   gcaugu u
 |||||| ||||||||||| |||||||||||| |||| ||||||||||||||                |||||          || |||                   |||||| c
 uucugG GCCAGAGUCAA CGUAUAugaguu cucg gcgucuucccucug                ugggu          cu acu                   cguacg c
c      C           G            a    a              gugaaaaguacugaac     aaaaagaauc  g   guaagacucgccugaaguc      a 

Annotation confidence Low

Genome context

chr7: 13744384-13744576 [+]

Mature gra-miR8750-5p

• Accession: MIMAT0034176
• Description: Gossypium raimondii gra-miR8750-5p mature miRNA
• Sequence: 11 - UCUUAGUUGGCAUAUACUCAAGGA - 34
• Evidence: experimental ; Illumina [1]

Mature gra-miR8750-3p

• Accession: MIMAT0055492
• Description: Gossypium raimondii gra-miR8750-3p mature miRNA
• Sequence: 168 - AUAUGCGAACUGAGACCGCG - 187
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629