Stem-loop gra-MIR167c

Accession

MI0027762

Description

Gossypium raimondii gra-MIR167c precursor miRNA

Literature search

2 open access papers mention gra-MIR167c
(12 sentences)

Sequence

1001073 reads, 130024.0 reads per million, 13 experiments

ugcuccaucaucagaUGAAGCUGCCAGCAUGAUCUUAauuucccucuguuuuaucgaggaaaaaucAGAUCAUGUGGCAGUUUCACCUGuugcugcuugcac
(((..((.((.(((.(((((((((((.((((((((...(((.((((.........)))).)))...))))))))))))))))))).))).)).))...))).

Structure

-   -uc  u  u   a           G        UAa   c    ugu 
 ugc   ca ca cag UGAAGCUGCCA CAUGAUCU   uuu ccuc   u
 |||   || || ||| ||||||||||| ||||||||   ||| ||||   u
 acg   gu gu GUC ACUUUGACGGU GUACUAGA   aaa ggag   u
c   uuc  c  u   C           -        cua   a    cua 

Annotation confidence High

Genome context

chr6: 48890368-48890469 [+]

Mature gra-miR167c-5p

• Accession: MIMAT0034167
• Description: Gossypium raimondii gra-miR167c-5p mature miRNA
• Sequence: 16 - UGAAGCUGCCAGCAUGAUCUUA - 37
• Evidence: experimental ; Illumina [1]

Mature gra-miR167c-3p

• Accession: MIMAT0055486
• Description: Gossypium raimondii gra-miR167c-3p mature miRNA
• Sequence: 67 - AGAUCAUGUGGCAGUUUCACCUG - 89
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629