miRBase entry: gra-MIR8781a

Stem-loop gra-MIR8781a


Accession
MI0027759
Description
Gossypium raimondii gra-MIR8781a precursor miRNA


Sequence

889 reads, 195.0 reads per million, 12 experiments
cuauuaauuugaucuuaguuuuaaauaauuuaauaaauuuaacccuuuacauauauaaauucuaucaauuugaacgucauauuuuuuaaccaaaauuuucagcuuuuaaaauagAGGCAUUCCACAUCUAUUAAUUGUuuuauuuaugcuggucaaagugauuuuuuuuauuacaaauauuaaaauauuuauauaauuuuauuguguauguuauaucuuuuuaaaauuuguauuuucuauuauuuuuagugguguuuaguuaauuucuaacacuaauuccuuaaaaauauaaauaaaaagggucauguaccaaauugaaaauaauuucaaccauaaauaaaacaauuaaaagcugaaagcuuugguuaggaaauuugaggauuaaauugauauaauuuauaaaugugaaggguuaaauuUAUUGAAUUAUUUAGAACUAGGAUcaaauugaua
.(((((((((((((((((((((((((((((((((((((((((((((((((((.((((((((.(((((((((((.(.(((.((((((((((((((.(((((((((((((.(((((((........).)))))).(((((((((((((((.((((....(((((((((((((((((((((.((((((.....(((((((............)))))))..)))))).)))))))........((((((((((((((((.((.......))))))))).....)))))))))...))))))))))))))..))))..((((((....)))))).)))))))))))))))))))))))))))).)))))))))))))).))).).))))))))))).)))))))).)))))))))))))))))))))))))))))))))))))))))))))))))))

Structure
c                                                   a        c           a g   u              a             ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------a      - GCA 
 uauuaauuugaucuuaguuuuaaauaauuuaauaaauuuaacccuuuacau uauaaauu uaucaauuuga c uca auuuuuuaaccaaa uuuucagcuuuua                                                                                                                                                                                                                      aauagA G   U
 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||| |||||||||||||| |||||||||||||                                                                                                                                                                                                                      |||||| |    
 auaguuaaacUAGGAUCAAGAUUUAUUAAGUUAUuuaaauugggaagugua auauuuaa auaguuaaauu g agu uaaaggauugguuu gaaagucgaaaau                                                                                                                                                                                                                      UUAUCU C   U
-                                                   a        u           a g   u              c             uaacaaaauaaauaccaacuuuaauaaaaguuaaaccauguacugggaaaaauaaauauaaaaauuccuuaaucacaaucuuuaauugauuuguggugauuuuuauuaucuuuuauguuuaaaauuuuucuauauuguauguguuauuuuaauauauuuauaaaauuauaaacauuauuuuuuuuagugaaacuggucguauuuauuuUGUUAA      A ACC 


Annotation confidence Low
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Genome context
chr8: 409852-410304 [-]

Database links

Mature gra-miR8781a-5p

Accession MIMAT0055483
Description Gossypium raimondii gra-miR8781a-5p mature miRNA
Sequence 115 - AGGCAUUCCACAUCUAUUAAUUGU - 138
Evidence experimental
unknown

Mature gra-miR8781a-3p

Accession MIMAT0034164
Description Gossypium raimondii gra-miR8781a-3p mature miRNA
Sequence 420 - UAUUGAAUUAUUUAGAACUAGGAU - 443
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629