Stem-loop gra-MIR8743a

Accession

MI0027758

Description

Gossypium raimondii gra-MIR8743a precursor miRNA

Sequence

495 reads, 114.0 reads per million, 9 experiments

aucacucuacUAUGAAAAGUUAUAAAAUGGUCAUccaauuauuuaauuuuaucuuuuggucauccaauugucuugaaauuuuugguguuuucauuuuuacuuuagucagcuaaugaucaaaaagacaaaauuaaauaauuagguAAUCAUUUUGUAAUUUUUcauuguuggauaaucaaaaaagaaaaaaagaacauaggugaa
.((((.(((..((((((((((((((((((((.(((.((((((((((((((.((((((((((((....(((.((..........((((....))))........)).)))...)))))).)))))).)))))))))))))).))).))))))))))))))))))))((((......((......)).......))))))))))).

Structure

a    u   -----------------------------cU                    C   c              a      -      ccaa   u  ugaaauuuuu    u 
 ucac cua                               AUGAAAAGUUAUAAAAUGGU AUc aauuauuuaauuuu ucuuuu ggucau    uug cu          ggug u
 |||| |||                               |||||||||||||||||||| ||| |||||||||||||| |||||| ||||||    ||| ||          ||||  
 agug gau                               uacUUUUUAAUGUUUUACUA ugg uuaauaaauuaaaa agaaaa cuagua    gac ga          uuac u
a    -   acaagaaaaaaagaaaaaacuaauagguugu                    A   a              c      a      -auc   u  --uuucauuu    u 

Annotation confidence Low

Genome context

chr4: 2016221-2016424 [-]

Mature gra-miR8743a-5p

• Accession: MIMAT0034163
• Description: Gossypium raimondii gra-miR8743a-5p mature miRNA
• Sequence: 11 - UAUGAAAAGUUAUAAAAUGGUCAU - 34
• Evidence: experimental ; Illumina [1]

Mature gra-miR8743a-3p

• Accession: MIMAT0055482
• Description: Gossypium raimondii gra-miR8743a-3p mature miRNA
• Sequence: 145 - AAUCAUUUUGUAAUUUUU - 162
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629