Stem-loop gra-MIR8743e

Accession

MI0027757

Description

Gossypium raimondii gra-MIR8743e precursor miRNA

Sequence

1251 reads, 209.0 reads per million, 13 experiments

gucacucgacUAUGAAAAGUUACAAAAUGGUCAUccaauuaugauuuuuuuucuuuuuuugucauccaacuauucaauuuugucuuuuugagucacucaacuaucuugaauuuuugaguGUUUCCAUUUUUACGUUAauuagcuguugaccaaaaaaagaaaaaaaagucauaguuggauggccaauuuguaacuuuucauaguugaaugauu
((((.(((((((((((((((((((((.(((((((((((((((((((((((((((((((((((((..((.(((........(((......(((.(((((((..((.....))..))))))).))).......))).....))).)).))).))))))))).))))))))))))))))))))))))).))))))))))))))))))))).)))).

Structure

-    c                     A                         -         -   uc  a   uucaauuu   -cuuuuu   u       cu  c 
 guca ucgacUAUGAAAAGUUACAAA UGGUCAUccaauuaugauuuuuuuu cuuuuuuug uca  ca cua        ugu       gag cacucaa  au u
 |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||  || |||        |||       ||| |||||||  || u
 uagu aguugauacuuuucaauguuu accgguagguugauacugaaaaaaa gaaaaaaac agu  gu gau        GCA       CUU Gugaguu  ua g
u    a                     a                         a         c   -u  c   ---uaAUU   UUUUUAC   U       uu  a 

Annotation confidence Low

Genome context

chr1: 6205271-6205483 [-]

Mature gra-miR8743e-5p

• Accession: MIMAT0034162
• Description: Gossypium raimondii gra-miR8743e-5p mature miRNA
• Sequence: 11 - UAUGAAAAGUUACAAAAUGGUCAU - 34
• Evidence: experimental ; Illumina [1]

Mature gra-miR8743e-3p

• Accession: MIMAT0055481
• Description: Gossypium raimondii gra-miR8743e-3p mature miRNA
• Sequence: 120 - GUUUCCAUUUUUACGUUA - 137
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629