miRBase entry: gra-MIR8743d

Stem-loop gra-MIR8743d


Accession
MI0027756
Description
Gossypium raimondii gra-MIR8743d precursor miRNA


Sequence

990 reads, 199.0 reads per million, 11 experiments
uugauaauguugguggcuauuaugUAACUUUUGAAAGUUGGAUGAgaaaauguaauuuuaaacaaaguuuagggacaguugguguaauuuacccauuuaauauuuggguaaacugcauuacuagucacucaauuguuaguauuuuuuugucacucaacUAUGAAAAGUUACAAAAUGGUCAUccaauuauua
.(((((((...((((((((((.((((((((((.(.(((((((((((((((((((((.........((((.((.((((((.((((((.((((((((.........)))))))).))))))))).))).)).)))))))).))))))))))))...))))).).)))))))))).))))))))))..)))))))

Structure
u       guu          a          G A     ---            -    uuuaaacaa    u  g   -   u      a        uuu 
 ugauaau   gguggcuauu ugUAACUUUU A AGUUG   GAUGAgaaaaug uaau         aguu ag gac agu ggugua uuuaccca   a
 |||||||   |||||||||| |||||||||| | |||||   |||||||||||| ||||         |||| || ||| ||| |||||| ||||||||   a
 auuauua   cUACUGGUAA ACAUUGAAAA U Ucaac   cuguuuuuuuau auug         uuaa uc cug uca uuacgu aaaugggu   u
-       -ac          A          G A     uca            g    ---------    c  a   a   -      c        uua 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
chr12: 26054019-26054210 [+]

Database links

Mature gra-miR8743d-5p

Accession MIMAT0055480
Description Gossypium raimondii gra-miR8743d-5p mature miRNA
Sequence 25 - UAACUUUUGAAAGUUGGAUGA - 45
Evidence experimental
unknown

Mature gra-miR8743d-3p

Accession MIMAT0034161
Description Gossypium raimondii gra-miR8743d-3p mature miRNA
Sequence 159 - UAUGAAAAGUUACAAAAUGGUCAU - 182
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629