Stem-loop gra-MIR166c

Accession

MI0027751

Description

Gossypium raimondii gra-MIR166c precursor miRNA

Literature search

2 open access papers mention gra-MIR166c
(6 sentences)

Sequence

4476675 reads, 497747.0 reads per million, 13 experiments

gaugGGAAUGUUGUUUGGCUCGAGGUCauauagguugaucuuuuauauauaauuuccaugaaauuuucuuggauuuauuuaaauuuuccgggaaaguuucuggauauguguauauauauagccuuauaugaucUCGGACCAGGCUUCAUUCCCGU
.(((((((((..((((((.((((((((((((((((((......((((((((...((((.((((((((((((((.............))))))))))))))))))))))))))......))))).))))))))))))).))))))..)))))))))

Structure

g         UU      C             -     aucuuu        auu    u              uuuau 
 augGGAAUG  GUUUGG UCGAGGUCauaua gguug      uauauaua   ucca gaaauuuucuugga     u
 |||||||||  |||||| ||||||||||||| |||||      ||||||||   |||| ||||||||||||||     u
 UGCCCUUAC  CGGACC GGCUcuaguauau ccgau      auguguau   aggu cuuugaaagggccu     a
-         UU      A             u     auauau        ---    -              uuuaa 

Annotation confidence High

Genome context

chr5: 63621122-63621276 [+]

Mature gra-miR166c-5p

• Accession: MIMAT0055477
• Description: Gossypium raimondii gra-miR166c-5p mature miRNA
• Sequence: 5 - GGAAUGUUGUUUGGCUCGAGGUC - 27
• Evidence: experimental ; unknown

Mature gra-miR166c-3p

• Accession: MIMAT0034156
• Description: Gossypium raimondii gra-miR166c-3p mature miRNA
• Sequence: 134 - UCGGACCAGGCUUCAUUCCCGU - 155
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629