miRBase entry: gra-MIR8741

Stem-loop gra-MIR8741


Accession
MI0027748
Description
Gossypium raimondii gra-MIR8741 precursor miRNA


Sequence

2051 reads, 505.0 reads per million, 13 experiments
auccccauacUAGCACUGAAGAUGAUGAUGGugacgggcaugaucuaacuuggaaccaguucucauuuucuugagggaguggacauagcaaaucugauuucucuuuguuuuuucuacuggcugagcuugacacuucaucacaaaccucgaccgauacaugaucaagccCAUCACCAUCAUCAUCUUCAGUgcuagggaua
(((((.....((((((((((((((((((((((((.((((.(((((..............((((((......))))))((((((...((((((...........))))))...))))))((.((((.(((...........)))..)))).)).......))))).)))).))))))))))))))))))))))))))))).

Structure
-     cauac                        c    a     ---------uaacuuggaaccaguucucauuuucuugaggg      cau      ucug 
 auccc     UAGCACUGAAGAUGAUGAUGGuga gggc ugauc                                         agugga   agcaaa    a
 |||||     |||||||||||||||||||||||| |||| |||||                                         ||||||   ||||||    u
 uaggg     aucgUGACUUCUACUACUACCACU Cccg acuag                                         ucaucu   uuguuu    u
a     -----                        A    a     uacauagccagcuccaaacacuacuucacaguucgagucgg      uuu      cucu 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
chr7: 56774055-56774254 [+]

Database links

Mature gra-miR8741-5p

Accession MIMAT0034153
Description Gossypium raimondii gra-miR8741-5p mature miRNA
Sequence 11 - UAGCACUGAAGAUGAUGAUGG - 31
Evidence experimental
Illumina [1]

Mature gra-miR8741-3p

Accession MIMAT0055474
Description Gossypium raimondii gra-miR8741-3p mature miRNA
Sequence 169 - CAUCACCAUCAUCAUCUUCAGU - 190
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629