miRBase entry: gra-MIR8738a

Stem-loop gra-MIR8738a


Accession
MI0027745
Description
Gossypium raimondii gra-MIR8738a precursor miRNA


Sequence

511 reads, 90.0 reads per million, 13 experiments
ccugagggucGUUAACUUUAACGGUCAACGGUUaaagaguuuuuuauucaauuuauaauuuuuuaugauuuuuauaaaaaaaauucuaauuuuuaauauuuuuugccacauaucacgccgugguugugacacggggugacuuugauugaaaaaaauuaAGGGUAGUUAACUUUAACaauuaacuguuaaaguuaaugaucaaaaag
......(((((((((((((((((((.((..(((((((..((((((((..((.((((((....)))))).))..))))))))...............................((((.(((((.......))))).))))((((((((......))))))))........)))))))..)).)))))))))))))))))))......

Structure
ccugag                   C  CG       aguuuuuuauucaauuuauaauuuuuuaugauuuuuauaaaaaaaauucuaauuuuuaauauuuuuugccacauaucacgccgugguugugacacgggguga        ga 
      ggucGUUAACUUUAACGGU AA  GUUaaag                                                                                                      cuuugauu  a
      ||||||||||||||||||| ||  |||||||                                                                                                      ||||||||   
      cuaguaauugaaauuguca uu  CAAUUUC                                                                                                      GGAauuaa  a
gaaaaa                   a  aa       ----------------------------------------------------------------------------------------------AAUUGAUG        aa 


Annotation confidence Low
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Genome context
chr7: 50017669-50017874 [-]

Database links

Mature gra-miR8738a-5p

Accession MIMAT0034150
Description Gossypium raimondii gra-miR8738a-5p mature miRNA
Sequence 11 - GUUAACUUUAACGGUCAACGGUU - 33
Evidence experimental
Illumina [1]

Mature gra-miR8738a-3p

Accession MIMAT0055472
Description Gossypium raimondii gra-miR8738a-3p mature miRNA
Sequence 159 - AGGGUAGUUAACUUUAAC - 176
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629