Stem-loop gra-MIR399

Accession

MI0027741

Description

Gossypium raimondii gra-MIR399 precursor miRNA

Literature search

1 open access papers mention gra-MIR399
(2 sentences)

Sequence

5946 reads, 893.0 reads per million, 13 experiments

accagucuuaGGGCACCUCUCACUUAGGCAGGuaauggugcauauuauggcauuuguucccaugacuUGCCAAAGGAGAGUUGCCCUGugacugcu
..(((((.(((((((.(((((.(((.(((((((.((((.(((............)))..)))).))))))).)))))))).))))))).)))))..

Structure

ac     u       C     A   A       a    -u   uauua 
  caguc uaGGGCA CUCUC CUU GGCAGGu augg  gca     u
  ||||| ||||||| ||||| ||| ||||||| ||||  |||      
  gucag GUCCCGU GAGAG GAA CCGUuca uacc  ugu     g
uc     u       U     -   A       g    cu   uuacg 

Annotation confidence High

Genome context

chr8: 55810583-55810678 [+]

Mature gra-miR399-5p

• Accession: MIMAT0034146
• Description: Gossypium raimondii gra-miR399-5p mature miRNA
• Sequence: 11 - GGGCACCUCUCACUUAGGCAGG - 32
• Evidence: experimental ; Illumina [1]

Mature gra-miR399-3p

• Accession: MIMAT0055468
• Description: Gossypium raimondii gra-miR399-3p mature miRNA
• Sequence: 68 - UGCCAAAGGAGAGUUGCCCUG - 88
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629