Stem-loop gra-MIR8732

Accession

MI0027732

Description

Gossypium raimondii gra-MIR8732 precursor miRNA

Sequence

666 reads, 153.0 reads per million, 11 experiments

agauuaaaauaugccauaaguccuuauacacuucauaaacuuggaauuuaguccuauacuuuuauuucuaggaauuuaauucaucuaccuuucaaauuucaaauuucaaguauuuuguuaaauuuagguucauuacaacaucaUUUUUUAGUUACAUUGCUaccaaguuagcacuuuuauuauuucaaaaggccacaccaauaaauuuaacaaaaaaaauuuacaauuuuaauaauuagauuugaauuuugaaauuugaaaaguauagggucuaaauuccugggaauaaaaauauauggacuaaauuacaaaucauGAAGAGUAUAGGGACUUAUGGCAUaauuuaacau
...(((((.((((((((((((((((((((.((((((....(((..(((((((((((((.(((((((((((((((((((((((...(((.((((((((((((((.(((((((.(((((((((((((((((.............((((..((((......))))..))))..((.(((((........)))))))...)))..))))))))))))))((((((...)))))).........))))))).)))))))))))))).)))..)))).))))))))))))))))))).)))).)))))))))..)))...)))))).)))))))))))))))))))).)))))...

Structure

aga     a                    a      aaac   ga         -    c                   -    auc   c              u       -----------------------a              --   ---------------ucauuacaacauc    UU    UA 
   uuaaa uaugccauaaguccuuauac cuucau    uug  auuuagucc uaua uuuuauuucuaggaauuua auuc   uac uuucaaauuucaaa uucaagu                        uuuuguuaaauuua  ggu                            aUUU  UAGU  C
   ||||| |||||||||||||||||||| ||||||    |||  ||||||||| |||| ||||||||||||||||||| ||||   ||| |||||||||||||| |||||||                        ||||||||||||||  |||                            ||||  ||||   
   aauuu aUACGGUAUUCAGGGAUAUG GAAGua    aac  uaaaucagg auau aaaauaaggguccuuaaau uggg   aug aaaguuuaaaguuu aaguuua                        aaaacaauuuaaau  cca                            ugaa  aUCG  A
uac     a                    A      -cua   au         u    a                   c    -au   a              u       gauuaauaauuuuaacauuuaaaa              aa   caccggaaaacuuuauuauuuucacgau    cc    UU 

Annotation confidence Low

Genome context

chr5: 18432907-18433256 [-]

Mature gra-miR8732-5p

• Accession: MIMAT0055460
• Description: Gossypium raimondii gra-miR8732-5p mature miRNA
• Sequence: 144 - UUUUUUAGUUACAUUGCU - 161
• Evidence: experimental ; unknown

Mature gra-miR8732-3p

• Accession: MIMAT0034137
• Description: Gossypium raimondii gra-miR8732-3p mature miRNA
• Sequence: 317 - GAAGAGUAUAGGGACUUAUGGCAU - 340
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629