Stem-loop gra-MIR7502d

Accession

MI0027731

Description

Gossypium raimondii gra-MIR7502d precursor miRNA

Sequence

1950 reads, 383.0 reads per million, 13 experiments

uguuaaaaguUUCAUCCAUUUGUACUGUUAAgaacuggcuugguugauaguuuaaucagauaacgacauaugguaugccagguguaacucauguugacauauaaaaacuagCUUUUAACAGUAGAAUUUGAUGGAauuuuuaaca
((((((((((((((((...((.(((((((((((.((((.((((((((....))))))))....((((((..(.(((((...))))).)..))))))...........)))).))))))))))).))...))))))))))))))))

Structure

                CAU  G           a    cuugguugauaguuuaaucagauaa      au g     c 
uguuaaaaguUUCAUC   UU UACUGUUAAga cugg                         cgacau  g uaugc  
||||||||||||||||   || ||||||||||| ||||                         ||||||  | ||||| a
acaauuuuuaAGGUAG   AA AUGACAAUUUU gauc                         guugua  c augug  
                UUU  G           C    --------------aaaaauauaca      cu a     g 

Annotation confidence Medium

Genome context

chr4: 61154822-61154966 [+]

Mature gra-miR7502d-5p

• Accession: MIMAT0055459
• Description: Gossypium raimondii gra-miR7502d-5p mature miRNA
• Sequence: 11 - UUCAUCCAUUUGUACUGUUAA - 31
• Evidence: experimental ; unknown

Mature gra-miR7502d-3p

• Accession: MIMAT0034136
• Description: Gossypium raimondii gra-miR7502d-3p mature miRNA
• Sequence: 112 - CUUUUAACAGUAGAAUUUGAUGGA - 135
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629