Stem-loop gra-MIR7492m

Accession

MI0027728

Description

Gossypium raimondii gra-MIR7492m precursor miRNA

Sequence

1379 reads, 242.0 reads per million, 13 experiments

acaaaugacgCUAUAGAACAUGACCUUUAGCAGCauguuuuguaaaaagcacugcuaaagaacaugaccuuuaggggagcaguacuuuccccacagacgccaCUAAAGAACAUGACAUUUAgcgacgcuuuuaccaaaaccgccgcuaaaggucauguucuuuagcggcauuuuu
..(((((.(((((.(((((((((((((((((.((..((((((..((((((..(((((((...((((..(((((((((((.......))))))...........)))))..))))...)))))))..))))))..)))))).)).))))))))))))))))).))))).)))))..

Structure

ac     a     U                 A  au      ua      ac       gaa    ac     -----------      ca 
  aaaug cgCUA AGAACAUGACCUUUAGC GC  guuuug  aaaagc  ugcuaaa   caug  cuuua           ggggag  g
  ||||| ||||| ||||||||||||||||| ||  ||||||  ||||||  |||||||   ||||  |||||           ||||||  u
  uuuac gcgau ucuuguacuggaaaucg cg  caaaac  uuuucg  gcgAUUU   GUAC  GAAAU           ccccuu  a
uu     g     u                 c  -c      ca      ca       ACA    AA     Caccgcagaca      uc 

Annotation confidence Low

Genome context

chr5: 10474072-10474246 [+]

Mature gra-miR7492m-5p

• Accession: MIMAT0034133
• Description: Gossypium raimondii gra-miR7492m-5p mature miRNA
• Sequence: 11 - CUAUAGAACAUGACCUUUAGCAGC - 34
• Evidence: experimental ; Illumina [1]

Mature gra-miR7492m-3p

• Accession: MIMAT0055457
• Description: Gossypium raimondii gra-miR7492m-3p mature miRNA
• Sequence: 103 - CUAAAGAACAUGACAUUUA - 121
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629