Stem-loop gra-MIR477

Accession

MI0027714

Description

Gossypium raimondii gra-MIR477 precursor miRNA

Literature search

1 open access papers mention gra-MIR477
(1 sentences)

Sequence

4857 reads, 962.0 reads per million, 12 experiments

uguacaugcaacccuuuuuuACUCUCUUCCAAAGGCUUCAAGCugcuauaugaaaacaaucauaguuCGAAGUCUUGGAAGAGAGUAAagaaaaguugucaugauuuu
....((((((((..((((((((((((((((((.((((((.((((.....((((......)))))))).))))))))))))))))))))))))..)))).)))).....

Structure

-ugua    -    cc                  A      A    gcuau    aa 
     caug caac  uuuuuuACUCUCUUCCAA GGCUUC AGCu     auga  a
     |||| ||||  |||||||||||||||||| |||||| ||||     ||||   
     guac guug  aagaAAUGAGAGAAGGUU CUGAAG uuga     uacu  c
uuuua    u    aa                  -      C    -----    aa 

Annotation confidence High

Genome context

chr4: 43300210-43300317 [-]

Mature gra-miR477-5p

• Accession: MIMAT0055448
• Description: Gossypium raimondii gra-miR477-5p mature miRNA
• Sequence: 21 - ACUCUCUUCCAAAGGCUUCAAGC - 43
• Evidence: experimental ; unknown

Mature gra-miR477-3p

• Accession: MIMAT0034119
• Description: Gossypium raimondii gra-miR477-3p mature miRNA
• Sequence: 68 - CGAAGUCUUGGAAGAGAGUAA - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629