Stem-loop gra-MIR8724

Accession

MI0027712

Description

Gossypium raimondii gra-MIR8724 precursor miRNA

Sequence

683 reads, 130.0 reads per million, 13 experiments

ccaacuggaugagcuuuuugcugacaugucaAUGAAAGUGCAUCCAGUUGGACGUAuuuucuuuggaauuuucagaaacgcuuccaguugaacgcgcuuuuCCUGACAUGUCAGUAGAAAGCUCaucuaguuag
..(((((((((((((((((((((((((((((..((((((((...((((((((.((..(((((..(((...)))))))).)).))))))))...))))))))..)))))))))))))))))))))))))))))..

Structure

cc                             AU        AUC        C  Au     uu   a 
  aacuggaugagcuuuuugcugacauguca  GAAAGUGC   CAGUUGGA GU  uuucu  gga  
  |||||||||||||||||||||||||||||  ||||||||   |||||||| ||  |||||  ||| u
  uugaucuaCUCGAAAGAUGACUGUACAGU  uuuucgcg   guugaccu cg  aaaga  cuu  
ga                             CC        caa        u  -c     --   u 

Annotation confidence Low

Genome context

chr4: 57593998-57594131 [-]

Mature gra-miR8724-5p

• Accession: MIMAT0055446
• Description: Gossypium raimondii gra-miR8724-5p mature miRNA
• Sequence: 32 - AUGAAAGUGCAUCCAGUUGGACGUA - 56
• Evidence: experimental ; unknown

Mature gra-miR8724-3p

• Accession: MIMAT0034117
• Description: Gossypium raimondii gra-miR8724-3p mature miRNA
• Sequence: 102 - CCUGACAUGUCAGUAGAAAGCUC - 124
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629