Stem-loop gra-MIR8723b

Accession

MI0027711

Description

Gossypium raimondii gra-MIR8723b precursor miRNA

Sequence

2703 reads, 519.0 reads per million, 13 experiments

ccauuaauugCCAUUAACGGUGUAACAGUAAGCUgauauggcacguuaaaucauaauuuuaaacaaaaauuuagguuaaauuauacaagugguccccauauuuuuuuucguuuuaagcaauuuuuuauguucuuuuaacuucuuuuuucuuuauucucuucugcuucuccuuuuauuucccuucuuucuccaucuuuuuuaacuucaaagaaaaaaaauuaaauugcucaaaacaaaaaaaaaaauauagggaucaauugcauaauuuaaccuaaaauuuucauuggaaauaaugauuuaacgugccacaUCAGCUUACCAUUACACCAUUAaugacaauuaacac
...(((((((.((((((.(((((((..((((((((((.((((((((((((((((.(((((....((((.(((((((((((((((.(((.(((((((.(((((((((((.(((((.((((((((...................((((((((((......................................................))))))))))....)))))))).)))))...))))))))))).))))))).))).))))))))))))))).)))).....))))).)))))))))))))))).))))))))))..))))))).)))))).)))))))...

Structure

cca       C      C       CA          a                a     -aaac    a               a   g       c           --c     a        uuuauguucuuuuaacuuc          auucucuucugcuucuccuuuuauuu 
   uuaauug CAUUAA GGUGUAA  GUAAGCUgau uggcacguuaaaucau auuuu     aaaa uuuagguuaaauuau caa ugguccc auauuuuuuuu   guuuu agcaauuu                   uuuuuucuuu                          c
   ||||||| |||||| |||||||  |||||||||| |||||||||||||||| |||||     |||| ||||||||||||||| ||| ||||||| |||||||||||   ||||| ||||||||                   ||||||||||                           
   aauuaac guaAUU CCACAUU  CAUUCGACUa accgugcaauuuagua uaaag     uuuu aaauccaauuuaaua guu acuaggg uauaaaaaaaa   caaaa ucguuaaa                   aaaaaagaaa                          c
cac       a      A       AC          c                a     guuac    a               c   a       a           aaa     c        ---------------uuaa          cuucaauuuuuucuaccucuuucuuc 

Annotation confidence Low

Genome context

chr5: 374273-374618 [-]

Mature gra-miR8723b-5p

• Accession: MIMAT0034116
• Description: Gossypium raimondii gra-miR8723b-5p mature miRNA
• Sequence: 11 - CCAUUAACGGUGUAACAGUAAGCU - 34
• Evidence: experimental ; Illumina [1]

Mature gra-miR8723b-3p

• Accession: MIMAT0055445
• Description: Gossypium raimondii gra-miR8723b-3p mature miRNA
• Sequence: 311 - UCAGCUUACCAUUACACCAUUA - 332
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629