Stem-loop gra-MIR164a

Accession

MI0027708

Description

Gossypium raimondii gra-MIR164a precursor miRNA

Literature search

3 open access papers mention gra-MIR164a
(9 sentences)

Sequence

596 reads, 120.0 reads per million, 12 experiments

aggguaagccaugcUGGAGAAGCAGGGCACAUGCUaaaucuauuaggcaaaaauauugucuuuuauuuugCAUGUGCCUUGGCUCUCCAUCUuggaaacuc
.((((...(((.(.((((((..((((((((((((.(((..((..((((((.....))))))..)).)))))))))))))))..)))))).).)))..))))

Structure

a    aag   u c      AG            U   uc  uu      a 
 gggu   cca g UGGAGA  CAGGGCACAUGC aaa  ua  aggcaa a
 ||||   ||| | ||||||  |||||||||||| |||  ||  |||||| a
 cuca   ggu C ACCUCU  GUUCCGUGUACg uuu  au  ucuguu u
-    -aa   U U      CG            -   -u  uu      a 

Annotation confidence High

Genome context

chr11: 4583737-4583837 [-]

Mature gra-miR164a-5p

• Accession: MIMAT0055442
• Description: Gossypium raimondii gra-miR164a-5p mature miRNA
• Sequence: 15 - UGGAGAAGCAGGGCACAUGCU - 35
• Evidence: experimental ; unknown

Mature gra-miR164a-3p

• Accession: MIMAT0034113
• Description: Gossypium raimondii gra-miR164a-3p mature miRNA
• Sequence: 71 - CAUGUGCCUUGGCUCUCCAUCU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629