miRBase entry: gra-MIR7486j

Stem-loop gra-MIR7486j


Accession
MI0027705
Description
Gossypium raimondii gra-MIR7486j precursor miRNA


Sequence

20055 reads, 3721.0 reads per million, 13 experiments
aucgcguucaCAUCAGCGCGAUGUCAGGGGACGUgucagcaaaucgcguccacaucagcgcgcuuugcuuauguggacacaaaucgcaccuacgaggaugcgguuuucugacacguccccagacAUCGCGCUGACGUGGACGCgauu
(((((((((((.(((((((((((((.(((((((((((((.(((((((((((((((.((((.....)))).)))))))).....(((......)))....))))))).))))))))))))).))))))))))))).))))))))))).

Structure
-           A             A             c       ---------------------        c    c 
 aucgcguucaC UCAGCGCGAUGUC GGGGACGUgucag aaaucgc                     guccacau agcg g
 ||||||||||| ||||||||||||| ||||||||||||| |||||||                     |||||||| |||| c
 uagCGCAGGUG AGUCGCGCUAcag ccccugcacaguc uuuggcg                     caggugua ucgu u
u           C             a             u       uaggagcauccacgcuaaaca        u    u 


Annotation confidence Low
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Genome context
chr9: 68902323-68902469 [-]

Database links

Mature gra-miR7486j-5p

Accession MIMAT0034110
Description Gossypium raimondii gra-miR7486j-5p mature miRNA
Sequence 11 - CAUCAGCGCGAUGUCAGGGGACGU - 34
Evidence experimental
Illumina [1]

Mature gra-miR7486j-3p

Accession MIMAT0055439
Description Gossypium raimondii gra-miR7486j-3p mature miRNA
Sequence 125 - AUCGCGCUGACGUGGACGC - 143
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629