Stem-loop gra-MIR7494c

Accession

MI0027699

Description

Gossypium raimondii gra-MIR7494c precursor miRNA

Sequence

3313 reads, 838.0 reads per million, 13 experiments

auacucuucugcUUCUCCCUUUGUUUUCCUcccuucuucauuucuuuuaauguaguuuuucuauguuuuucauuuguuaaaacuaguucacaagguugcgucacucgaaaaaauuaaauuguucaaaaaauaaaaguauagggacuaguuuuaacaaauggcaaacuuagaaaauugcguuaaaagaaauagagaAUGGAGGAAAACAGAGGGAGAAGCagaagagcau
...(((((((((((((((((((((((((((((.(((((.((((((((((((((((((((.(((.((((.((((((((((((((((((((((((((((...((....))...))))...))))...................)))))))))))))))))))).)))).))))))))))))))))))))))).))))).)))))))))))))))))))))))))))))...

Structure

aua                             c     c                    u   u    u                    -------------------    ---    gcg  a 
   cucuucugcUUCUCCCUUUGUUUUCCUcc uucuu auuucuuuuaauguaguuuu cua guuu ucauuuguuaaaacuaguuc                   acaa   gguu   uc c
   ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||                   ||||   ||||   ||  
   gagaagaCGAAGAGGGAGACAAAAGGAGG Aagag uaaagaaaauugcguuaaaa gau caaa gguaaacaauuuugaucagg                   uguu   uuaa   ag u
uac                             U     a                    -   u    c                    gauaugaaaauaaaaaacu    aaa    aaa  c 

Annotation confidence Low

Genome context

chr5: 39574059-39574287 [-]

Mature gra-miR7494c-5p

• Accession: MIMAT0055436
• Description: Gossypium raimondii gra-miR7494c-5p mature miRNA
• Sequence: 13 - UUCUCCCUUUGUUUUCCU - 30
• Evidence: experimental ; unknown

Mature gra-miR7494c-3p

• Accession: MIMAT0034104
• Description: Gossypium raimondii gra-miR7494c-3p mature miRNA
• Sequence: 196 - AUGGAGGAAAACAGAGGGAGAAGC - 219
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629