miRBase entry: gra-MIR8713

Stem-loop gra-MIR8713


Accession
MI0027697
Description
Gossypium raimondii gra-MIR8713 precursor miRNA


Sequence

957 reads, 183.0 reads per million, 13 experiments
gagauaaguuAUGACUGUUUUAAUGAAGAUUGCGcgaguaaaauuucgagacgagauuauuacaaaaauuaugaguuuuaagcuucuaauucgaguucaagaaacucauaauuuucguaauaaucccguccagaaauuuuacucgcgcaaucuucACUAAAAUGGUCAUAACUuaaaaa
....((((((((((((((((((.((((((((((((((((((((((((..((((.(((((((((.(((((((((((((((.(((((.......)))))...))))))))))))))).))))))))).))))..)))))))))))))))))))))))).))))))))))))))))))....

Structure
gaga                  A                        ga    a         a               --a     cu 
    uaaguuAUGACUGUUUUA UGAAGAUUGCGcgaguaaaauuuc  gacg gauuauuac aaaauuaugaguuuu   agcuu  a
    |||||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||| |||||||||||||||   |||||  a
    auUCAAUACUGGUAAAAU Acuucuaacgcgcucauuuuaaag  cugc cuaauaaug uuuuaauacucaaag   uugag  u
aaaa                  C                        ac    c         c               aac     cu 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
chr5: 59328455-59328633 [+]

Database links

Mature gra-miR8713-5p

Accession MIMAT0034102
Description Gossypium raimondii gra-miR8713-5p mature miRNA
Sequence 11 - AUGACUGUUUUAAUGAAGAUUGCG - 34
Evidence experimental
Illumina [1]

Mature gra-miR8713-3p

Accession MIMAT0055435
Description Gossypium raimondii gra-miR8713-3p mature miRNA
Sequence 156 - ACUAAAAUGGUCAUAACU - 173
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629