miRBase entry: gra-MIR7504i

Stem-loop gra-MIR7504i


Accession
MI0027696
Description
Gossypium raimondii gra-MIR7504i precursor miRNA


Sequence

1067 reads, 246.0 reads per million, 13 experiments
AGAAAGGAUUAUAUGAAAcugagauaccaugucauuuguauccauuuucaauaauuuaaugucauuuuagcauuuucaucuuaaauuucagcacauuauguuggauuugguuauuuuuaagaugaaaaaugcuaaaaugauuuuaaauuauUGAAAAGAGAUACAAUGACAugguaucccaguuucuuacaaucuuuucuc
((((((((((.((.(((((((.((((((((((((((.(((((..(((((((((((((((.(((((((((((((((((((((((((.(((((((.....)))))))..........))))))))).)))))))))))))))).)))))))))))))))..))))))))))))))))))).))))))).)).)))))))))).

Structure
-          A  U       a              u     ca               u                -         ---------u       c 
 AGAAAGGAUU UA GAAAcug gauaccaugucauu guauc  uuuucaauaauuuaa gucauuuuagcauuuu caucuuaaa          uucagca a
 |||||||||| || ||||||| |||||||||||||| |||||  ||||||||||||||| |||||||||||||||| |||||||||          ||||||| u
 ucuuuucuaa au cuuugac cuaugguACAGUAA CAUAG  AAAAGUuauuaaauu uaguaaaaucguaaaa guagaauuu          agguugu u
c          c  u       c              -     AG               u                a         uuauugguuu       a 


Annotation confidence Low
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Genome context
chr10: 37907762-37907962 [-]

Database links

Mature gra-miR7504i-5p

Accession MIMAT0034101
Description Gossypium raimondii gra-miR7504i-5p mature miRNA
Sequence 1 - AGAAAGGAUUAUAUGAAA - 18
Evidence experimental
Illumina [1]

Mature gra-miR7504i-3p

Accession MIMAT0061474
Description Gossypium raimondii gra-miR7504i-3p mature miRNA
Sequence 152 - UGAAAAGAGAUACAAUGACA - 171
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629