miRBase entry: gra-MIR8705

Stem-loop gra-MIR8705


Accession
MI0027686
Description
Gossypium raimondii gra-MIR8705 precursor miRNA


Sequence

474 reads, 112.0 reads per million, 11 experiments
auguucaaccAGUUCAUACUAGUUCGUGGGUCAauuagauuuuuaccucucacugaauugauaacuuauuuuguucuuaauccaaucaguccaaccaguuuagauaacauugaauuuugaucuuuuuuauauuuuuaaaauauuuuuucaaagaagucuuuauuuuuggauuuuaaaauguucuuuuuuuucauauuuuuacguuuaaaaaauauuuuuaaacauauuuguguuuaaaauaagaaaaaugauaauuuuuaauuuuaaaaaauuacguauuuuuaaaggguauaaaccaaauugacaaaaaauuguaaauguuaagaacuaaaauaguuuaaaaguuuuaaaaucgguugacacgcgaauuaaaaugaaCUGAUCUGACUGAACUAAAAAAUaaguugaauua
..(((((((((((((((..(((((((((.(((((((.((((((...........(((((..(((.((((((((((((((((......(((((((..(((..((((..(.(((((....(((...(((((......))))).)))..))))).)..))))..))).)))))))..(((((..((.(((((((.((((((((.......))))))))((((((((((....))))))))))..))))))).))..)))))...(((((((((........)))))))))(((....)))..(((.((((....)))).)))))))))))).))))))).)))..))))).))))))))))))).)))))))))..)))))))).((.....))............)))))))..

Structure
au       ----------------------        AC         G       a      uaccucucacu     ga   c       -         ccaaucaguccaaccaguuuagauaacauugaauuuugaucuuuuuuauauuuuuaaaauauuuuuucaaagaagucuuuauuuuuggauuuuaaaauguucuuuuuuuucauauuuu 
  guucaac                      cAGUUCAU  UAGUUCGUG GUCAauu gauuuu           gaauu  uaa uuauuuu guucuuaau                                                                                                                      u
  |||||||                      ||||||||  ||||||||| ||||||| ||||||           |||||  ||| ||||||| |||||||||                                                                                                                       
  uaaguug                      GUCaagua  auuaagcgc caguugg cuaaaa           uuuga  auu gauaaaa caagaauug                                                                                                                      a
au       aaUAAAAAAUCAAGUCAGUCUA        aa         a       -      ----------u     aa   u       u         uaaauguuaaaaaacaguuaaaccaaauaugggaaauuuuuaugcauuaaaaaauuuuaauuuuuaauaguaaaaagaauaaaauuuguguuuauacaaauuuuuauaaaaaauuugc 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
chr5: 15853753-15854164 [-]

Database links

Mature gra-miR8705-5p

Accession MIMAT0034091
Description Gossypium raimondii gra-miR8705-5p mature miRNA
Sequence 11 - AGUUCAUACUAGUUCGUGGGUCA - 33
Evidence experimental
Illumina [1]

Mature gra-miR8705-3p

Accession MIMAT0055427
Description Gossypium raimondii gra-miR8705-3p mature miRNA
Sequence 379 - CUGAUCUGACUGAACUAAAAAAU - 401
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629