Stem-loop gra-MIR530a

Accession

MI0027681

Description

Gossypium raimondii gra-MIR530a precursor miRNA

Sequence

11756 reads, 2116.0 reads per million, 13 experiments

guagcuuuuaucUGCAUUUGCACCUGCACCUUAUuguuuguuucagcuaugucagaaaaacaaaacacuguaagauauguuuuguguggugugguuggagaccaaacaaagAGGUGCAGAUGCAGUUGCAGGUgaaugccau
...((.((((((((((.(((((.(((((((((.(((((((((((((((((((((.(....(((((((.(((...))))))))))).))))))))))))))..))))))).))))))))).))))).)))))))))).))...

Structure

gua  u          U     C         A       --              g aaaa       c   a 
   gc uuuaucUGCA UUGCA CUGCACCUU Uuguuug  uuucagcuauguca a    caaaaca ugu  
   || |||||||||| ||||| ||||||||| |||||||  |||||||||||||| |    ||||||| ||| a
   cg aagUGGACGU GACGU GACGUGGAg aacaaac  gagguugguguggu u    guuuugu aua  
uac  u          U     A         a       ca              g ----       -   g 

Annotation confidence High

Genome context

chr13: 58084673-58084814 [+]

Mature gra-miR530a-5p

• Accession: MIMAT0055423
• Description: Gossypium raimondii gra-miR530a-5p mature miRNA
• Sequence: 13 - UGCAUUUGCACCUGCACCUUAU - 34
• Evidence: experimental ; unknown

Mature gra-miR530a-3p

• Accession: MIMAT0034086
• Description: Gossypium raimondii gra-miR530a-3p mature miRNA
• Sequence: 112 - AGGUGCAGAUGCAGUUGCAGGU - 133
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629