Stem-loop gra-MIR7584e

Accession

MI0027666

Description

Gossypium raimondii gra-MIR7584e precursor miRNA

Sequence

2571 reads, 637.0 reads per million, 12 experiments

acucuguauuAGGAGUUAGAUUGUAUUUUAUcccauuuacacaaaaaaauaggcaaauugauuuuucuacguuagauaaaaaaguaaauugaucuuucaauuaaaaauuucauacauuuuugcuauuaaaaauugguuuuuguaccuuaaaaugagacacauugcguguaacuaucuaguuauuuuaucuauuaugccaauuuuuaAUAGAAAUGAUCAAUUUGuuuugagaucuaacgaaaaagauaaauuuauuuauuuuuuauaaacgaaaaaaaauacaauuuaacuuuuaguauaaagg
.((.(((((((((((((((((((((((((......((((....((((((((((.(((((.((((((.(.((((((((...((((((((((((((.......(((((((.......)))))))(((((((((((((((....(((...((((((((.((((.....))))..........))))))))..)))...)))))))))))))))....))))))))))))))...))))))))).)))))).))))).)))))))))).))))......))))))))))))))))))))))))).)).

Structure

a  c                         AUccca    caca          c     g      c a        aaa              uuucaauuaaaaauuucauacauuuuug               uuuu   ccu        ---------g    a 
 cu uguauuAGGAGUUAGAUUGUAUUUU      uuua    aaaaaauagg aaauu auuuuu u cguuagau   aaaguaaauugauc                            cuauuaaaaauuggu    gua   uaaaauga          acac u
 || |||||||||||||||||||||||||      ||||    |||||||||| ||||| |||||| | ||||||||   ||||||||||||||                            |||||||||||||||    |||   ||||||||          |||| u
 ga auaugauuuucaauuuaacauaaaa      aaau    uuuuuuauuu uuuaa uagaaa a gcaaucua   uuuuGUUUAACUAG                            GAUAauuuuuaaccg    uau   auuuuauu          ugug g
g  a                         aaaagc    ---a          a     a      a -        gag              ------------------------UAAA               -uau   -cu        gaucuaucaa    c 

Annotation confidence Low

Genome context

chr9: 746856-747159 [-]

Mature gra-miR7584e-5p

• Accession: MIMAT0034071
• Description: Gossypium raimondii gra-miR7584e-5p mature miRNA
• Sequence: 11 - AGGAGUUAGAUUGUAUUUUAU - 31
• Evidence: experimental ; Illumina [1]

Mature gra-miR7584e-3p

• Accession: MIMAT0055415
• Description: Gossypium raimondii gra-miR7584e-3p mature miRNA
• Sequence: 207 - AUAGAAAUGAUCAAUUUG - 224
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629