Stem-loop gra-MIR7504g

Accession

MI0027664

Description

Gossypium raimondii gra-MIR7504g precursor miRNA

Sequence

974 reads, 186.0 reads per million, 12 experiments

uccaauguaagaAUGACAAAUCAGAUUUUUCuuuugauuuuuagcuuuuuuucucuugaaaaaaaauucaaauccaacuaaaauuguagaaaaucAGGAGGAAAUCUGAUUUGUCAUUCucacauugaa
..((((((.((((((((((((((((((((.((((((((((((.((((((((((....))))))))....................)).)))))))))))))))))))))))))))))))).))))))..

Structure

uc      a                    U            a  --------------------        u 
  caaugu agaAUGACAAAUCAGAUUUU Cuuuugauuuuu gc                    uuuuuuuc c
  |||||| |||||||||||||||||||| |||||||||||| ||                    ||||||||  
  guuaca uCUUACUGUUUAGUCUAAAG GAGGAcuaaaag ug                    aaaaaaag u
aa      c                    -            a  uuaaaaucaaccuaaacuua        u 

Annotation confidence Low

Genome context

chr2: 42701801-42701929 [+]

Mature gra-miR7504g-5p

• Accession: MIMAT0055413
• Description: Gossypium raimondii gra-miR7504g-5p mature miRNA
• Sequence: 13 - AUGACAAAUCAGAUUUUUC - 31
• Evidence: experimental ; unknown

Mature gra-miR7504g-3p

• Accession: MIMAT0034069
• Description: Gossypium raimondii gra-miR7504g-3p mature miRNA
• Sequence: 96 - AGGAGGAAAUCUGAUUUGUCAUUC - 119
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629