Stem-loop gra-MIR7504f

Accession

MI0027663

Description

Gossypium raimondii gra-MIR7504f precursor miRNA

Sequence

2093 reads, 325.0 reads per million, 13 experiments

AAUAAGAGAAUGAUAAAUCAGAUUUuucuucuugauuuucagccuuuuccuccagaaaaaauuuaaaucaaauuaaaagcacaaaaaaucAGGAGAAAAAAAUCUGAUUUGUCAuucucccauu
.....((((((((((((((((((((((.(((((((((((..((.(((((.....)))))..(((((......))))).))....)))))))))))..)))))))))))))))))))))).....

Structure

AAUAA                      -c           --ca  ------------------c     c 
     GAGAAUGAUAAAUCAGAUUUuu  uucuugauuuu    gc                   uuuuc u
     ||||||||||||||||||||||  |||||||||||    ||                   ||||| c
     cucuuACUGUUUAGUCUAAAAA  GAGGAcuaaaa    cg                   aaaag c
uuacc                      AA           aaca  aaaauuaaacuaaauuuaa     a 

Annotation confidence Low

Genome context

chr5: 11144827-11144950 [-]

Mature gra-miR7504f-5p

• Accession: MIMAT0055412
• Description: Gossypium raimondii gra-miR7504f-5p mature miRNA
• Sequence: 1 - AAUAAGAGAAUGAUAAAUCAGAUUU - 25
• Evidence: experimental ; unknown

Mature gra-miR7504f-3p

• Accession: MIMAT0034068
• Description: Gossypium raimondii gra-miR7504f-3p mature miRNA
• Sequence: 91 - AGGAGAAAAAAAUCUGAUUUGUCA - 114
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629